Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2004


 P. McCormick, J. Inman, J. Ahrens, G. Roth, C.D. Hansen. “Hardware-Accelerated System for Quantitatively Driven Visualization and Analysis,” In Proceeding of IEEE Visualization 2004, pp. 171--178. 2004.


A. Paoluzzi, V. Pascucci, G. Scorzelli. “Progressive BSP Representation and Boolean Operations for Dimension-Independent Polyhedra,” In ACM Symposium on Solid Modeling, Note: UCRL-PROC-208679, pp. 203-211. June, 2004.


V. Pascucci. “Isosurface Computation Made Simple: Hardware Acceleration, Adaptive Refinement and Tetrahedral Stripping,” In Proceedings of the Joint Eurographics - IEEE TVCG Symposium on Visualization (VisSym), Note: UCRL-CONF-202459, pp. 293--300. May, 2004.


S. Pesco, P. Lindstrom, V. Pascucci, C.T. Silva. “Implicit Occluders,” In Proceeding of IEEE Volume Visualization 2004, pp. 47--54. 2004.


N.S. Phatak, J.L. McCann, Q. Sun, S.E. Kim, D.L. Parker, E.K. Jeong, R.K. Sanders, A.I. Veress, J.A. Weiss. “Noninvasive Measurement of Ligament Strain,” In Proceedings of 50th Annual Meeting of the Orthopaedic Research Society, San Francisco, CA, Vol. 29, pp. 893. March, 2004.


S.D. Ramsey, J.T. Johnson III, C.D. Hansen. “Adaptive Temporal Tone Mapping,” In Computer Graphics and Imaging, pp. 124--128. 2004.


F. B. Sachse. “Computational Cardiology: Modeling of Anatomy, Electrophysiology, and Mechanics,” LNCS 2966, Springer, Berlin, Heidelberg, New York 2004.


A.A. Samsonov, C.R. Johnson.. “Removal of Intensity Bias in Magnitude Spin-Echo MRI Images by Nonlinear Diffusion Filtering,” In Proceedings of SPIE Medical Imaging 2004, San Diego, CA, Vol. 5370, pp. 743--752. 2004.


A.A. Samsonov, C.R. Johnson. “Non-Cartesian POCSENSE,” In Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), Kyoto, Japan, pp. 2648. 2004.


A.A. Samsonov, C.R. Johnson. “Unbiased Nonlinear Filtering of Fast Spin Echo MRI Images,” In Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), Kyoto, Japan, pp. 760. 2004.


A.A. Samsonov, E.G. Kholmovski, C.R. Johnson. “Phase-Constrained Reconstruction of Sensitivity-Encoded MRI Data with POCSENSE,” In Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), Kyoto, Japan, pp. 2647. 2004.


A.A. Samsonov, C.R. Johnson. “Noise-Adaptive Nonlinear Diffusion Filtering of MR Images with Spatially Varying Noise Levels,” In Magn. Reson. Med., Vol. 52, pp. 798--806. 2004.


A.A. Samsonov, E.G. Kholmovski, D.L. Parker, C.R. Johnson. “POCSENSE: POCS-based reconstruction for sensitivity encoded MRI,” In Magn. Reson. Med., Vol. 52, pp. 1397--1406. 2004.


A.A. Samsonov, C.R. Johnson. “Multicoil MRI Artifacts Correction Using Parallel Pocs,” In Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), 2004.


A.R. Sanderson, C.R. Johnson, R.M. Kirby. “Display of Vector Fields Using a Reaction Diffusion Model,” In Proceeding of IEEE Visualization 2004, pp. 115--122. 2004.


U. Schmitt, C.H. Wolters, A. Anwander, T. Knoesche. “STR: A New Spatio-Temporal Approach for Accurate and Efficient Current Density Reconstruction,” In Proceedings of The 14th International Conference on Biomagnetism, pp. 591--592. 2004.


H.-W. Shen, G.-S. Li, U. Bordoloi. “Interactive Visualization of Three-Dimensional Vector Fields with Flexible Appearance Control,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 10, No. 4, pp. 434--445. 2004.


J. Simpson, S.J. Balling. “ANNOT3D and Packaging of 3D Visualizations for Educational Purposes,” In Proceedings of The 12th Annual Medicine Meets Virtual Reality Conference, Newport Beach, CA, pp. (in press). January, 2004.


K.J. Stabile, J. Pfaeffle, J.A. Weiss, K. Fisher, M.M. Tomaino. “Bi-directional Mechanical Properties of the Human Forearm Interosseous Ligament,” In J. Orthoped. Res., Vol. 22, No. 3, pp. 607--612. 2004.


F. Stenger, T. Cook, R.M. Kirby. “Sinc Solution of Biharmonic Problems,” In Canadian Applied Mathematics Quarterly, Vol. 12, No. 3, pp. 391--413. 2004.