Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2003


 L. Ibanez, W. Schroeder, L. Ng, J. Cates. “The ITK Software Guide,” Kitware, Inc., 2003.
ISBN: 1-930934-10-6


M. Ikits, C.D. Hansen, C.R. Johnson. “A Comprehensive Calibration and Registration Procedure for the Visual Haptic Workbench,” In Proceedings of the Ninth Eurographics Workshop on Virtual Environments, Zurich, Switzerland, pp. 247--254. May, 2003.


M. Ikits, J.D. Brederson, C.D. Hansen, C.R. Johnson. “A Constraint-Based Technique for Haptic Volume Exploration,” In Proceedings IEEE Visualization 2003, Seattle, WA, pp. 263--269. October, 2003.


J. Jeon, A.E. Lefohn, G. A. Voth. “An Improved Polarflex Water Model,” In The Journal of Chemical Physics, Vol. 118, No. 16, pp. 7504--7518. 2003.


C.R. Johnson, A.R. Sanderson. “A Next Step: Visualizing Errors and Uncertainty,” In IEEE Computer Graphics and Applications, Vol. 23, No. 5, pp. 6--10. September/October, 2003.


S. Joshi, P. Lorenzen, G. Gerig, E. Bullitt. “Structural and Radiometric Asymmetry in Brain Images,” In Med Image Anal, Vol. 7, No. 2, pp. 155--170. June, 2003.


G. Kindlmann, R.T. Whitaker, T. Tasdizen, T. Möller. “Curvature-Based Transfer Functions for Direct Volume Rendering: Methods and Applications,” In Proceedings Visualization 2003, pp. 67. October, 2003.


R.M. Kirby, G.E. Karniadakis. “De-Aliasing on Non-Uniform Grids: Algorithms and Applications,” In J. Comp. Phys., Vol. 191, No. 1, pp. 267--282. October, 2003.


G.E. Karniadakis, R.M. Kirby. “Parallel Scientific Computing in C++ and MPI: A Seamless Approach to Parallel Algorithms and their Implementation,” Cambridge University Press, pp. 628 pages. June, 2003.
ISBN: 0521520800


R.M. Kirby, G.E. Karniadakis. “De-Aliasing on Non-Uniform Grids: Algorithms and Applications,” In Journal of Computational Physics, Vol. 191, pp. 249--264. 2003.


J.M. Kniss, S. Premoze, C.D. Hansen, P. Shirley, A. McPherson. “A Model for Volume Lighting and Modeling,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 9, No. 2, April - June, 2003.


J.M. Kniss, S. Premoze, M. Ikits, A.E. Lefohn, C.D. Hansen, E. Praun. “Gaussian Transfer Functions for Multi-Field Volume Visualization,” In IEEE Visualization 2003, Seattle, Wa., pp. 497--504. October, 2003.


J.M. Kniss, S. Premoze, M. Ikits, A.E. Lefohn, C.D. Hansen. “Closed Form Solution to the Volume Rendering Integral with Gaussian Transfer Functions,” Technical Report, No. UUCS-03-013, University of Utah School of Computing, 2003.


E. Lamar, V. Pascucci. “A Multi-Layered Image Cache For Scientific Visualization,” In Proceedings of IEEE Symposium on Parallel and Large-Data Visualization and Graphics, Note: UCRL-JC-152963, pp. 61--68. October, 2003.


M. Langbein, G. Scheuermann, X. Tricoche. “An Efficient Point Location Method for Visualization in Large Unstructured Grids,” In Proceedings of Vision, Modeling, and Visualization 2003, IOS Press, pp. 27--36. 2003.


M. Lazar, D.M. Weinstein, J.S. Tsuruda, K.M. Hasan, K. Arfanakis, E. Meyer, B. Badie, H.A. Rowley, V. Haughton, A. Field, A.L. Alexander. “White Matter Tractography Using Diffusion Tensor Deflection,” In Human Brain Mapping, Vol. 18, pp. 306--321. 2003.


A.E. Lefohn, J.M. Kniss, C.D. Hansen, R.T. Whitaker. “Interactive Deformation and Visualization of Level Set Surfaces Using Graphics Hardware,” In IEEE Visualization 2003, Seattle, Wa., pp. 75--82. October, 2003.


A.E. Lefohn, J. Cates, R.T. Whitaker. “Interactive, GPU-Based Level Sets for 3D Brain Tumor Segmentation,” Technical Report, No. UUCS-03-004, University of Utah School of Computing, 2003.


A.E. Lefohn, R.T. Caruso, E. Reinhard, B. Budge, P. Shirley. “An Ocularist's Approach to Human Iris Synthesis,” In IEEE Computer Graphics and Applications, Vol. 23, No. 6, pp. 70--75. 2003.


A.E. Lefohn, J.M. Kniss, C.D. Hansen, R.T. Whitaker. “Interactive Deformation and Visualization of Level Set Surfaces Using Graphics Hardware,” Technical Report, No. UUCS-03-005, University of Utah School of Computing, 2003.