The Visualization Handbook|
C.D. Hansen, C.R. Johnson. Elsevier, 2005.
Diffusion Tensor MRI Visualization|
S. Zhang, D.H. Laidlaw, G. Kindlmann. In The Visualization Handbook, Edited by C.D. Hansen and C.R. Johnson, Elsevier, pp. 327--340. 2005.
Practical Vessel Imaging by Computed Tomography in Live Transgenic Mouse Models for Human Tumors|
G.L. Kindlmann, D.M. Weinstein, G.M. Jones, C.R. Johnson, M.R. Capecchi, C. Keller. In Journal of Molecular Imaging, Vol. 4, No. 4, pp. 417--424. 2005.
SCIRun/BioPSE: Integrated Problem Solving Environment for Bioelectric Field Problems and Visualization|
R.S. Macleod, D.M. Weinstein, J.D. de St. Germain, D.H. Brooks, C.R. Johnson, S.G. Parker. In Proceedings of the Int. Symp. on Biomed. Imag., Arlington, Va, pp. 640--643. April, 2004.
Display of Vector Fields Using a Reaction Diffusion Model|
A.R. Sanderson, C.R. Johnson, R.M. Kirby. In Proceeding of IEEE Visualization 2004, pp. 115--122. 2004.
Top Scientific Visualization Research Problems|
C.R. Johnson. In IEEE Computer Graphics and Applications: Visualization Viewpoints, Vol. 24, No. 4, pp. 13--17. July/August, 2004.
Higher-order nonlinear priors for surface reconstruction|
T. Tasdizen, R.T. Whitaker. In IEEE Trans. Pattern Anal. & Mach. Intel., Vol. 26, No. 7, pp. 878--891. July, 2004.
Biomedical Computing and Visualization Software Environments|
C.R. Johnson, R.S. MacLeod, S.G. Parker, D.M. Weinstein. In Comm. ACM, Vol. 47, No. 11, pp. 64--71. 2004.
Modeling Uncertainty in Flow Simulations via Generalized Polynomial Chaos|
D. Xiu, G.E. Karniadakis. In Journal of Computational Physics, Vol. 187, No. 1, pp. 137--167. 2003.
We present a new algorithm to model the input uncertainty and its propagation in incompressible flow simulations. The stochastic input is represented spectrally by employing orthogonal polynomial functionals from the Askey scheme as trial basis to represent the random space. A standard Galerkin projection is applied in the random dimension to obtain the equations in the weak form. The resulting system of deterministic equations is then solved with standard methods to obtain the solution for each random mode. This approach can be considered as a generalization of the original polynomial chaos expansion, first introduced by Wiener [Am. J. Math. 60 (1938) 897]. The original method employs the Hermite polynomials (one of the 13 members of the Askey scheme) as the basis in random space. The algorithm is applied to micro-channel flows with random wall boundary conditions, and to external flows with random freestream. Efficiency and convergence are studied by comparing with exact solutions as well as numerical solutions obtained by Monte Carlo simulations. It is shown that the generalized polynomial chaos method promises a substantial speed-up compared with the Monte Carlo method. The utilization of different type orthogonal polynomials from the Askey scheme also provides a more efficient way to represent general non-Gaussian processes compared with the original Wiener–Hermite expansions.
Keywords: Polynomial chaos, Uncertainty, Fluids, Stochastic modeling
Predictability and Uncertainty in CFD|
D. Lucor, D. Xiu, C.-H. Su, G.E. Karniadakis. In International Journal for Numerical Methods in Fluids, Vol. 43, No. 5, pp. 483--505. 2003.
CFD has reached some degree of maturity today, but the new question is how to construct simulation error bars that reflect uncertainties of the physical problem, in addition to the usual numerical inaccuracies. We present a fast Polynomial Chaos algorithm to model the input uncertainty and its propagation in incompressible flow simulations. The stochastic input is represented spectrally by Wiener–Hermite functionals, and the governing equations are formulated by employing Galerkin projections. The resulted system is deterministic, and therefore existing solvers can be used in this new context of stochastic simulations. The algorithm is applied to a second-order oscillator and to a flow-structure interaction problems. Open issues and extensions to general random distributions are presented.
Keywords: computational fluid dynamics, polynomial chaos, Wiener–Hermite functionals, incompressible flows
A New Stochastic Approach to Transient Heat Conduction Modeling with Uncertainty|
D. Xiu, G.E. Karniadakis. In International Journal of Heat and Mass Transfer, Vol. 46, No. 24, pp. 4681--4693. 2003.
We present a generalized polynomial chaos algorithm for the solution of transient heat conduction subject to uncertain inputs, i.e. random heat conductivity and capacity. The stochastic input and solution are represented spectrally by the orthogonal polynomial functionals from the Askey scheme, as a generalization of the original polynomial chaos idea of Wiener [Am. J. Math. 60 (1938) 897]. A Galerkin projection in random space is applied to derive the equations in the weak form. The resulting set of deterministic equations is subsequently discretized by the spectral/hp element method in physical space and integrated in time. Numerical examples are given and the convergence of the chaos expansion is demonstrated for a model problem.
Keywords: Uncertainty, Stochastic modeling, Polynomial chaos, Transient heat conduction, Random medium
Display of Vector Fields Using a Reaction-Diffusion Model|
SCI Institute Technical Report, A.R. Sanderson, C.R. Johnson. No. UUSCI-2003-002, University of Utah, June, 2003.
A Constraint-Based Technique for Haptic Volume Exploration|
M. Ikits, J.D. Brederson, C.D. Hansen, C.R. Johnson. In Proceedings IEEE Visualization 2003, Seattle, WA, pp. 263--269. October, 2003.
Graphics Applications for Grid Computing|
C.D. Hansen, C.R. Johnson. In IEEE Comp. Graph. & Applic., pp. 20--21. March/April, 2003.
Workshop on Dynamic Data-Driven Application Systems|
C.C. Douglas, M. Cole, Y. Efendiev, R. Ewing, V. Ginting, C.R. Johnson, G.M. Jones, R. Lazarov, C. Shannon, J. Simpson. In ICCS 2003, Melbourne, Australia, June 2-3, 2003.
Anisotropic diffusion of surface normals for feature preserving surface reconstruction|
T. Tasdizen, R.T. Whitaker. In Proceedings of Fourth International Conferenceon 3-D Imaging and Modeling, pp. 353--360. October, 2003.
A Comprehensive Calibration and Registration Procedure for the Visual Haptic Workbench|
M. Ikits, C.D. Hansen, C.R. Johnson. In Proceedings of the Ninth Eurographics Workshop on Virtual Environments, Zurich, Switzerland, pp. 247--254. May, 2003.
Cramer-Rao Bounds for Nonparametric Surface Reconstruction from Range Data|
T. Tasdizen, R.T. Whitaker. In Proceedings of Fourth International Conference on 3-D Imaging and Modeling, pp. 70--77. October, 2003.
Particle-Based Simulation of Fluids|
S. Premoze, T. Tasdizen, J. Bigler, A.E. Lefohn, R. T. Whitaker. In Eurographics, pp. 401--410. 2003.
Feature preserving variational smoothing of terrain data|
T. Tasdizen, R.T. Whitaker. In IEEE Workshop on Variational, Geometric and Level Set Methods in Computer Vision, October, 2003.